Nucleotide BLAST Online Application--author by Kevin L.
地址
以16S比对为例
比对报告模板
Blastn report JOB_ID: fnednl45w3n8kudy7z99dxlw0s6apnwv
BLASTN 2.16.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: 16S ribosomal RNA (Bacteria and Archaea type strains)
27,159 sequences; 39,351,594 total letters
Query= sequence_input CAACCAGCTAATCAGATATCG
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
NR_026079.2 Neisseria gonorrhoeae strain NCTC 8375 16S ribosomal ... 42.1 6e-05
NR_104830.1 Neisseria iguanae strain NVSL 85737 16S ribosomal RNA... 42.1 6e-05
NR_118249.1 Neisseria oralis strain 6332 16S ribosomal RNA, parti... 42.1 6e-05
NR_028899.1 Neisseria lactamica strain NCTC 10617 16S ribosomal R... 42.1 6e-05
>NR_026079.2 Neisseria gonorrhoeae strain NCTC 8375 16S ribosomal RNA, complete
sequence
Length=1541
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAACCAGCTAATCAGATATCG 21
|||||||||||||||||||||
Sbjct 254 CAACCAGCTAATCAGATATCG 234
>NR_104830.1 Neisseria iguanae strain NVSL 85737 16S ribosomal RNA, partial
sequence
Length=1479
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAACCAGCTAATCAGATATCG 21
|||||||||||||||||||||
Sbjct 242 CAACCAGCTAATCAGATATCG 222
>NR_118249.1 Neisseria oralis strain 6332 16S ribosomal RNA, partial sequence
Length=1463
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAACCAGCTAATCAGATATCG 21
|||||||||||||||||||||
Sbjct 227 CAACCAGCTAATCAGATATCG 207
>NR_028899.1 Neisseria lactamica strain NCTC 10617 16S ribosomal RNA, partial
sequence
Length=1355
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAACCAGCTAATCAGATATCG 21
|||||||||||||||||||||
Sbjct 185 CAACCAGCTAATCAGATATCG 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 272799576
Database: 16S ribosomal RNA (Bacteria and Archaea type strains)
Posted date: Aug 27, 2024 5:36 AM
Number of letters in database: 39,351,594
Number of sequences in database: 27,159
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2
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在线比对，非常的方便，比TBTOOLs简单
MARK